Subscribe free to our newsletters via your
. GPS News .




FLORA AND FAUNA
Together, humans and computers can figure out the plant world
by Staff Writers
Washington DC (SPX) Sep 01, 2014


Morphology is the study of form, and form as represented in this collection of articles has a broad scope-from microscopic pollen grains and charcoal particles, to macroscopic leaves and whole root systems.

As technology advances, science has become increasingly about data - how to gather it, organize it, and analyze it. The creation of key databases to analyze and share data lies at the heart of bioinformatics, or the collection, classification, storage, and analysis of biochemical and biological information using computers and software.

The tools and methods used in bioinformatics have been instrumental in the development of fields such as molecular genetics and genomics. But, in the plant sciences, bioinformatics and biometrics are employed in all fields-not just genomics-to enable researchers to grapple with the rich and varied data sources at their disposal.

In July 2013, Surangi Punyasena of the University of Illinois at Urbana-Champaign and Selena Smith of the University of Michigan organized a special session at Botany 2013, the annual meeting of the Botanical Society of America in New Orleans, Louisiana.

They invited plant morphologists, systematists, and paleobotanists, as well as computer scientists, applied mathematicians, and informaticians-all of whom were united in their interest in developing or applying novel biometric or bioinformatic methods to the form and function of plants. The goal: to provide a forum for a cross-disciplinary exchange of ideas and methods on the theme of the quantitative analysis of plant morphology.

As Punyasena explains, "The quantitative analysis of morphology is the next frontier of bioinformatics. Humans are very good at learning to recognize shape and texture, but there are many problems where accuracy and consistency are difficult to achieve with only expert-derived, qualitative data, and in many fields there are often a limited number of experts trained in these visual assessments."

The results of that session, along with invited papers, are published in the August issue of Applications in Plant Sciences as a special issue on Bioinformatic and Biometric Methods in Plant Morphology. Morphology is, of course, the study of form, and form as represented in this collection of articles has a broad scope-from microscopic pollen grains and charcoal particles, to macroscopic leaves and whole root systems.

The methods presented in the issue, both recent and emerging, are varied as well, including automated classification and identification, geometric morphometrics, and skeleton networks, as well as tests of the limits of human assessment.

Three articles in the issue look at the application of biometric and bioinformatic methods in palynology: Han et al. (2014) introduce an online Miocene pollen database with semantic image search capabilities; Holt and Bebbington (2014) test the applications of an automated pollen classifier; and Mander et al. (2014) analyze differences in human and automated classification of grass pollen based on surface textures.

Other papers highlight how biometric and bioinformatic methods apply to plants more broadly, including using skeleton networks to examine plant morphology such as roots (Bucksch, 2014), improving the quantification of geometric leaf shape metrics with a new protocol to measure leaf circularity (Krieger, 2014), comparing human and automated methods of quantifying aspects of leaf venation (Green et al., 2014), and applying morphometrics to charcoalified plant remains (Crawford and Belcher, 2014).

Taken as a whole, the issue presents a compelling argument for the importance of both computational and morphometric approaches.

"I think that there's been a renaissance in morphometric approaches," notes Punyasena. "New techniques are using easy access to high-quality digital imaging, powerful computers, and advances in computational analyses like machine learning to rethink the way we gather and analyze morphological data."

As advances in technology allow researchers to gather more and more morphological and image-based data, it has become increasingly important to be able to analyze and interpret those data quickly, accurately, consistently, and objectively. Biometric and bioinformatic methods make this possible, and reveal the potential of data collected from the shape and form of plants to be as rich of a data source as genetic data.

.


Related Links
American Journal of Botany
Darwin Today At TerraDaily.com






Comment on this article via your Facebook, Yahoo, AOL, Hotmail login.

Share this article via these popular social media networks
del.icio.usdel.icio.us DiggDigg RedditReddit GoogleGoogle








FLORA AND FAUNA
Evolution used similar toolkits to shape flies, worms, and humans
New Haven CT (SPX) Aug 29, 2014
Although separated by hundreds of millions of years of evolution, flies, worms, and humans share ancient patterns of gene expression, according to a massive Yale-led analysis of genomic data. Two related studies led by scientists at Harvard and Stanford, also published Aug. 28 in the same issue of the journal Nature, tell a similar story: Even though humans, worms, and flies bear little ob ... read more


FLORA AND FAUNA
Chinese scientists' team efforts in dissecting rice complex agronomic traits in recent years

New study charts the global invasion of crop pests

Water 'thermostat' could help engineer drought-resistant crops

How to prevent organic food fraud

FLORA AND FAUNA
Nanoplasmonic and optical resonators create laser-like light emission

Ferroelectric Materials Suffer Unexpected Electric Polarizations

Electrical engineers take major step toward photonic circuits

'Cavity protection effect' helps to conserve quantum information

FLORA AND FAUNA
China Southern swings to net loss in first half

MH370 may have turned south 'earlier' than thought

First of 3 upgraded aerial tankers returned to France

F-35 hanger construction work contracted by Navy

FLORA AND FAUNA
Booming electric car sales under fire in Norway

Sweden court accepts receivership for Saab carmaker

France's Peugeot gets approval for China plant: report

China fines Japanese auto parts firms $200 mn for monopoly

FLORA AND FAUNA
Chile fines British-South African copper mine $4.5 million

China fines insurance firms $18 mn for price monopoly

Malaysia refuses New Zealand activist entry

Samsung denies child labour at Chinese supplier

FLORA AND FAUNA
Brazil cracks 'biggest' Amazon deforestation gang

Brazil arrests 8 in Amazon deforestation swoop

World's primary forests on the brink

New analysis links tree height to climate

FLORA AND FAUNA
New Earth-Observing Instrument Makes Successful Balloon Flight

Sentinel-1 poised to monitor motion

NASA Begins Hurricane Mission with Global Hawk Flight to Cristobal

NASA Rainfall Satellite Out Of Fuel, but Continues to Provide Data

FLORA AND FAUNA
Engineers develop new sensor to detect tiny individual nanoparticles

Shaping the Future of Nanocrystals

Introducing the multi-tasking nanoparticle

Electron microscopy enables imaging of gold nanoparticles




The content herein, unless otherwise known to be public domain, are Copyright 1995-2014 - Space Media Network. All websites are published in Australia and are solely subject to Australian law and governed by Fair Use principals for news reporting and research purposes. AFP, UPI and IANS news wire stories are copyright Agence France-Presse, United Press International and Indo-Asia News Service. ESA news reports are copyright European Space Agency. All NASA sourced material is public domain. Additional copyrights may apply in whole or part to other bona fide parties. Advertising does not imply endorsement, agreement or approval of any opinions, statements or information provided by Space Media Network on any Web page published or hosted by Space Media Network. Privacy Statement All images and articles appearing on Space Media Network have been edited or digitally altered in some way. Any requests to remove copyright material will be acted upon in a timely and appropriate manner. Any attempt to extort money from Space Media Network will be ignored and reported to Australian Law Enforcement Agencies as a potential case of financial fraud involving the use of a telephonic carriage device or postal service.